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SRX19038712: PacBio Iso-seq O. felineus
1 PACBIO_SMRT (Sequel II) run: 3.6M spots, 3.7G bases, 1.2Gb downloads

Design: A total of 50 adult O. felineus flukes were mechanically homogenized in 1ml of Tri reagent (Sigma-Aldrich, USA) and extracted as per the manufacturers instructions. Finally, 2 mg of RNA was resuspended in 20 ml of DEPC H20 and submitted for RNA sequencing at the Australian Genome Research Facility
Submitted by: James Cook University
Study: Opisthorchis felineus Iso-Seq
show Abstracthide Abstract
Opisthorchis felineus is one of the three most medically important species belonging to the family of fish borne zoonotic trematodes known as Opisthorchiidae. O. felineus is endemic to the river plains of Western Siberia and Eastern Europe and it is estimated that more than 1.6 million people could be infected with these parasites. Chronic opisthorchiasis may lead to severe hepatobiliary morbidity and an elevated risk of cholangiocarcinoma (bile duct cancer) which is an aggressive cancer with a 5-year survival rate of 25% when diagnosed at an early stage. O. felineus adult flukes were collected from experimentally infected hamsters and cultured in vitro in serum free media. Identifying and characterizing proteins using transcriptomics and proteomics approaches is more biologically informative and meaningful than using genomics alone. The information from this study will form a biologically relevant dataset of O. felineus proteins that could be used in developing diagnostic and therapeutic tools to manage the human cost of O. felineus infections and its associated diseases.
Sample:
SAMN32745579 • SRS16456196 • All experiments • All runs
Library:
Name: Pool1
Instrument: Sequel II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 3.6M spots, 3.7G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR230862243,557,2943.7G1.2Gb2023-01-16

ID:
26201944

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